Bio python sequences
examples/biology/sequences.py
from Bio.Seq import Seq # Nucleotide Sequences my_dna = Seq("AGTACACTGGTAGGCCTTACAG_T") print(my_dna) # AGTACACTGGTAGGCCTTACAG_T print(my_dna.complement()) # TCATGTGACCATCCGGAATGTC_A print(my_dna.reverse_complement()) # A_CTGTAAGGCCTACCAGTGTACT print(my_dna.transcribe()) # AGUACACUGGUAGGCCUUACAG_U my_rna = Seq("GAC_U") print(my_rna) # GAC_U print(my_rna.reverse_complement()) # A_GUC print(my_rna.reverse_complement()) # A_GUC print(my_rna.transcribe()) # GAC_U
examples/biology/sequences_err.py
from Bio.Seq import Seq what_is_this = Seq("AGTC_U") what_is_this.complement() # ValueError: Mixed RNA/DNA found